PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001178-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family M-type_MADS
Protein Properties Length: 72aa    MW: 8252.68 Da    PI: 10.9156
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001178-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.74.8e-31959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+ rqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+e+ss
  WALNUT_00001178-RA  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDAEVALIVFSTKGKLFEFSS 59
                        79***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.212161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-39160IPR002100Transcription factor, MADS-box
CDDcd002652.92E-36261No hitNo description
SuperFamilySSF554554.45E-30266IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-32323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-323859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD AEVALIVFST KGKLFEFSSD  60
SRFILLHDYV SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-20172175Myocyte-specific enhancer factor 2B
1tqe_Q6e-20172175Myocyte-specific enhancer factor 2B
1tqe_R6e-20172175Myocyte-specific enhancer factor 2B
1tqe_S6e-20172175Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9640284e-54KF964028.1 Betula luminifera MADS-box protein 1S (MADS1) mRNA, complete cds, alternatively spliced.
GenBankX996544e-54X99654.1 Betula pendula mRNA for MADS box protein (MADS4 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099308.19e-35Agamous-like MADS-box protein AGL8-like protein
RefseqXP_015943760.12e-34PREDICTED: agamous-like MADS-box protein AGL8 homolog isoform X1
SwissprotQ388766e-35AGL8_ARATH; Agamous-like MADS-box protein AGL8
TrEMBLA0A067JND43e-38A0A067JND4_JATCU; Uncharacterized protein
STRINGPOPTR_0017s13400.14e-35(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.14e-36AGAMOUS-like 8